Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Ntrk2-204ENSMUST00000224259 3049 ntBASIC11.76□□□□□ -0.53
Msx1P13297 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Msx1P13297 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC11.76□□□□□ -0.53
Msx1P13297 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Smim8-205ENSMUST00000108134 782 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Msx1P13297 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Msx1P13297 Klra5-202ENSMUST00000118060 1279 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Msx1P13297 Gm11656-201ENSMUST00000137462 395 ntTSL 5 BASIC11.76□□□□□ -0.53
Msx1P13297 Klra5-201ENSMUST00000014683 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Gm8546-201ENSMUST00000178288 1264 ntBASIC11.76□□□□□ -0.53
Msx1P13297 Gm3096-201ENSMUST00000185770 364 ntBASIC11.76□□□□□ -0.53
Msx1P13297 Gm37845-201ENSMUST00000194977 355 ntBASIC11.76□□□□□ -0.53
Msx1P13297 Gm44405-201ENSMUST00000198952 126 ntBASIC11.76□□□□□ -0.53
Msx1P13297 Gm44958-201ENSMUST00000203734 736 ntBASIC11.76□□□□□ -0.53
Msx1P13297 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC11.76□□□□□ -0.53
Msx1P13297 Ermard-209ENSMUST00000226561 1019 ntBASIC11.76□□□□□ -0.53
Msx1P13297 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Crry-ps-201ENSMUST00000079090 1309 ntBASIC11.76□□□□□ -0.53
Msx1P13297 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msx1P13297 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.75□□□□□ -0.53
Msx1P13297 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Msx1P13297 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 AC125108.1-201ENSMUST00000218986 2330 ntBASIC11.75□□□□□ -0.53
Msx1P13297 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC11.75□□□□□ -0.53
Msx1P13297 Gm20426-201ENSMUST00000173657 440 ntBASIC11.75□□□□□ -0.53
Msx1P13297 Gm3508-201ENSMUST00000186012 792 ntBASIC11.75□□□□□ -0.53
Msx1P13297 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Gm10109-202ENSMUST00000206890 1211 ntBASIC11.75□□□□□ -0.53
Msx1P13297 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.75□□□□□ -0.53
Msx1P13297 Olfr724-202ENSMUST00000213390 1152 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Msx1P13297 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Olfr684-201ENSMUST00000060893 939 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Msx1P13297 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
Msx1P13297 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Msx1P13297 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Rnf17-202ENSMUST00000223627 2077 ntBASIC11.75□□□□□ -0.53
Msx1P13297 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
Msx1P13297 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
Msx1P13297 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC11.75□□□□□ -0.53
Msx1P13297 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 AC154186.1-201ENSMUST00000227711 1597 ntBASIC11.75□□□□□ -0.53
Msx1P13297 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Msx1P13297 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Msx1P13297 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Gm43858-201ENSMUST00000199418 1778 ntBASIC11.74□□□□□ -0.53
Msx1P13297 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Msx1P13297 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Msx1P13297 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC11.74□□□□□ -0.53
Msx1P13297 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 64.9 ms