Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm16348-202ENSMUST00000146654 2385 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Efcab12-201ENSMUST00000032468 2551 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Pigc-205ENSMUST00000193784 4207 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm14822-201ENSMUST00000122247 291 ntBASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm3436-201ENSMUST00000179930 840 ntBASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm27772-201ENSMUST00000184900 187 ntBASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm29608-201ENSMUST00000190444 463 ntBASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gm44344-201ENSMUST00000200287 129 ntBASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC10.9□□□□□ -0.66
Trem1Q9JKE2 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Zfp780b-201ENSMUST00000081618 3004 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Cd300lg-202ENSMUST00000107163 2605 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Diablo-207ENSMUST00000145152 2588 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Osbpl7-206ENSMUST00000168565 3535 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trem1Q9JKE2 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Trem1Q9JKE2 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Tie1-203ENSMUST00000184261 4234 ntTSL 2 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Cped1-201ENSMUST00000115382 2002 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Igsf6-201ENSMUST00000047194 2175 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Apobec3-205ENSMUST00000175752 1977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm7336-201ENSMUST00000107041 1232 ntBASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm42599-201ENSMUST00000201308 469 ntBASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 AC140397.2-201ENSMUST00000224213 834 ntBASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Lrsam1-201ENSMUST00000028132 3981 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Txk-201ENSMUST00000113604 2260 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Ntrk3-206ENSMUST00000195262 2774 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Serpinb6b-203ENSMUST00000164541 1719 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Gm15222-202ENSMUST00000228667 1726 ntBASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Ncam1-203ENSMUST00000192584 2525 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trem1Q9JKE2 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trem1Q9JKE2 Cr1l-204ENSMUST00000193094 2776 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trem1Q9JKE2 Txlng-201ENSMUST00000041370 3862 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trem1Q9JKE2 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trem1Q9JKE2 Ilf3-201ENSMUST00000067646 3549 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trem1Q9JKE2 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms