Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Vps28Q9D1C8 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps28Q9D1C8 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps28Q9D1C8 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Gm45495-201ENSMUST00000200940 1700 ntBASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Rprl1-202ENSMUST00000198476 238 ntBASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Gm7293-201ENSMUST00000216682 1007 ntBASIC12.52□□□□□ -0.41
Vps28Q9D1C8 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps28Q9D1C8 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm13296-201ENSMUST00000117854 997 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm9630-201ENSMUST00000178304 885 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm29199-201ENSMUST00000187766 775 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm19187-201ENSMUST00000206781 892 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 AC153974.2-201ENSMUST00000218577 1025 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 CT030182.1-201ENSMUST00000225935 533 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm7993-201ENSMUST00000200970 1384 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps28Q9D1C8 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm14644-201ENSMUST00000116671 647 ntBASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms