Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Use1Q9CQ56 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Use1Q9CQ56 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC11.53□□□□□ -0.56
Use1Q9CQ56 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Use1Q9CQ56 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC11.53□□□□□ -0.56
Use1Q9CQ56 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Use1Q9CQ56 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Use1Q9CQ56 Gm42943-201ENSMUST00000199676 3242 ntBASIC11.52□□□□□ -0.56
Use1Q9CQ56 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Use1Q9CQ56 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Use1Q9CQ56 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Use1Q9CQ56 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Use1Q9CQ56 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Use1Q9CQ56 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Use1Q9CQ56 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Gm12314-201ENSMUST00000118104 538 ntBASIC11.52□□□□□ -0.57
Use1Q9CQ56 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC11.52□□□□□ -0.57
Use1Q9CQ56 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Gm29127-201ENSMUST00000188304 517 ntBASIC11.52□□□□□ -0.57
Use1Q9CQ56 Gm38230-201ENSMUST00000193572 1159 ntBASIC11.52□□□□□ -0.57
Use1Q9CQ56 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Gm43174-201ENSMUST00000195914 2445 ntBASIC11.52□□□□□ -0.57
Use1Q9CQ56 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Use1Q9CQ56 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Gm4984-201ENSMUST00000115987 360 ntBASIC11.51□□□□□ -0.57
Use1Q9CQ56 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC11.51□□□□□ -0.57
Use1Q9CQ56 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC11.51□□□□□ -0.57
Use1Q9CQ56 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.51□□□□□ -0.57
Use1Q9CQ56 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC11.51□□□□□ -0.57
Use1Q9CQ56 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Gm43579-201ENSMUST00000202387 1307 ntBASIC11.51□□□□□ -0.57
Use1Q9CQ56 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Use1Q9CQ56 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.51□□□□□ -0.57
Use1Q9CQ56 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Use1Q9CQ56 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 87.1 ms