Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 AC154671.1-201ENSMUST00000228617 1578 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm12164-201ENSMUST00000121695 551 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm5616-201ENSMUST00000165252 384 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm8741-201ENSMUST00000174736 384 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm29615-201ENSMUST00000185371 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm28224-201ENSMUST00000186078 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm29001-201ENSMUST00000186177 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm28292-201ENSMUST00000186593 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm28101-201ENSMUST00000187608 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm29076-201ENSMUST00000187689 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm28302-201ENSMUST00000187931 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm28646-201ENSMUST00000188220 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm28205-201ENSMUST00000189177 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm29032-201ENSMUST00000189797 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm28695-201ENSMUST00000190300 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm37448-201ENSMUST00000192795 697 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm5455-201ENSMUST00000058710 715 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm37131-201ENSMUST00000192502 1561 ntBASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim47Q8C0E3 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Meig1-202ENSMUST00000115081 421 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Gm4034-201ENSMUST00000187674 480 ntBASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Olfr128-201ENSMUST00000080231 1050 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Trim47Q8C0E3 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms