Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 AC113441.2-201ENSMUST00000221538 1468 ntBASIC14.36□□□□□ -0.11
Trim56Q80VI1 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim56Q80VI1 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm7049-201ENSMUST00000223520 1712 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm22133-201ENSMUST00000102082 109 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm23949-201ENSMUST00000104027 127 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm14277-201ENSMUST00000121195 360 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm27627-201ENSMUST00000183644 150 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm27530-201ENSMUST00000184096 98 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm17931-201ENSMUST00000208132 634 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm5525-201ENSMUST00000190438 1312 ntBASIC14.35□□□□□ -0.11
Trim56Q80VI1 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim56Q80VI1 Gm37348-201ENSMUST00000193104 1789 ntBASIC14.34□□□□□ -0.11
Trim56Q80VI1 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 CT025624.1-201ENSMUST00000224007 2700 ntBASIC14.34□□□□□ -0.11
Trim56Q80VI1 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC14.34□□□□□ -0.11
Trim56Q80VI1 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim56Q80VI1 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trim56Q80VI1 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim56Q80VI1 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms