Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm17376-201ENSMUST00000166016 84 ntBASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm4768-201ENSMUST00000206199 686 ntBASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm32390-201ENSMUST00000212713 1172 ntBASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Gm29199-201ENSMUST00000187766 775 ntBASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Gm6082-201ENSMUST00000215204 454 ntBASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sh3rf1Q69ZI1 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm24255-201ENSMUST00000104481 128 ntBASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms