Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim40Q3UWA4 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
Trim40Q3UWA4 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim40Q3UWA4 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim40Q3UWA4 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim40Q3UWA4 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim40Q3UWA4 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 AL593843.1-201ENSMUST00000195891 145 ntBASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Gm38671-201ENSMUST00000200573 130 ntBASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Cdk7-205ENSMUST00000225990 1159 ntBASIC11.41□□□□□ -0.58
Trim40Q3UWA4 AC155252.1-201ENSMUST00000226462 1208 ntBASIC11.41□□□□□ -0.58
Trim40Q3UWA4 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 AC124397.2-201ENSMUST00000225575 2215 ntBASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Trim40Q3UWA4 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 AC211878.3-201ENSMUST00000222629 2018 ntBASIC11.4□□□□□ -0.58
Trim40Q3UWA4 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Gm11618-201ENSMUST00000117946 267 ntBASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Rmrp-201ENSMUST00000157463 271 ntBASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Gm9022-201ENSMUST00000182482 992 ntBASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Gm27437-201ENSMUST00000183429 107 ntBASIC11.4□□□□□ -0.58
Trim40Q3UWA4 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC11.4□□□□□ -0.58
Trim40Q3UWA4 AC135669.1-201ENSMUST00000213585 412 ntBASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim40Q3UWA4 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms