Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm8194-201ENSMUST00000159783 859 ntBASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Gm44882-201ENSMUST00000205702 802 ntBASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 CT485607.1-201ENSMUST00000216100 85 ntBASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Gm10305-201ENSMUST00000195331 2475 ntBASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Upf3aQ3ULJ3 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Gm11628-201ENSMUST00000117568 171 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Gm5778-201ENSMUST00000171003 1072 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Gm7600-201ENSMUST00000209657 785 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Gm45575-201ENSMUST00000210283 548 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 AC134860.1-201ENSMUST00000224867 660 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 AC171241.1-201ENSMUST00000228144 1166 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Upf3aQ3ULJ3 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gm11956-201ENSMUST00000119525 512 ntBASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gm14585-201ENSMUST00000120713 634 ntBASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gm11660-201ENSMUST00000120955 412 ntBASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gm18893-201ENSMUST00000198416 943 ntBASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Gm19287-201ENSMUST00000203190 358 ntBASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC12.81□□□□□ -0.36
Upf3aQ3ULJ3 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Upf3aQ3ULJ3 Gm42829-201ENSMUST00000198417 2585 ntBASIC12.8□□□□□ -0.36
Upf3aQ3ULJ3 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3aQ3ULJ3 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3aQ3ULJ3 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms