Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 CT573047.1-201ENSMUST00000223652 851 ntBASIC14.15□□□□□ -0.14
Rnf180Q3U827 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Rnf180Q3U827 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.15
Rnf180Q3U827 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Rnf180Q3U827 Ap5m1-205ENSMUST00000227431 3757 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm10584-201ENSMUST00000207036 2628 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm8464-202ENSMUST00000146697 1142 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm4750-201ENSMUST00000151942 1142 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm10807-201ENSMUST00000177134 795 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm25872-201ENSMUST00000177784 100 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm9034-201ENSMUST00000182071 1005 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 9530085P06Rik-201ENSMUST00000182121 827 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm42660-201ENSMUST00000197733 947 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm5989-201ENSMUST00000096092 2077 ntBASIC14.14□□□□□ -0.15
Rnf180Q3U827 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rnf180Q3U827 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Prss23os-202ENSMUST00000179361 1362 ntBASIC14.13□□□□□ -0.15
Rnf180Q3U827 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Gm6755-201ENSMUST00000100598 864 ntBASIC14.13□□□□□ -0.15
Rnf180Q3U827 Gm6740-201ENSMUST00000100617 864 ntBASIC14.13□□□□□ -0.15
Rnf180Q3U827 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Gm8152-201ENSMUST00000120842 637 ntBASIC14.13□□□□□ -0.15
Rnf180Q3U827 Chn2-209ENSMUST00000146114 1227 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Tex33-202ENSMUST00000165170 1072 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Gm3298-202ENSMUST00000172110 615 ntTSL 5 BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Ywhaq-ps1-201ENSMUST00000206623 710 ntBASIC14.13□□□□□ -0.15
Rnf180Q3U827 Gm7940-201ENSMUST00000218195 769 ntBASIC14.13□□□□□ -0.15
Rnf180Q3U827 Gm7525-201ENSMUST00000219425 454 ntBASIC14.13□□□□□ -0.15
Rnf180Q3U827 AC154305.2-201ENSMUST00000225813 901 ntBASIC14.13□□□□□ -0.15
Rnf180Q3U827 Olfr1417-201ENSMUST00000061235 948 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Tcl1b5-201ENSMUST00000000717 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Zfand4-210ENSMUST00000223495 1751 ntTSL 5 BASIC14.13□□□□□ -0.15
Rnf180Q3U827 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Hsf2-204ENSMUST00000220042 2430 ntTSL 5 BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rnf180Q3U827 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf180Q3U827 AC126257.1-201ENSMUST00000213195 1536 ntBASIC14.12□□□□□ -0.15
Rnf180Q3U827 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Trbv31-201ENSMUST00000103300 334 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Rnf180Q3U827 Gm24933-201ENSMUST00000103762 110 ntBASIC14.12□□□□□ -0.15
Rnf180Q3U827 Gm23252-201ENSMUST00000103776 110 ntBASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms