Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm22018-201ENSMUST00000104357 131 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm8213-201ENSMUST00000118191 441 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm12203-201ENSMUST00000118235 598 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm12209-201ENSMUST00000120089 596 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm13350-201ENSMUST00000120519 479 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm16296-201ENSMUST00000159905 325 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm22121-201ENSMUST00000175148 54 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Mir3102-201ENSMUST00000175555 104 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm37008-201ENSMUST00000195712 319 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm3961-201ENSMUST00000204425 994 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 AC165260.3-202ENSMUST00000224550 1031 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 AC164426.2-201ENSMUST00000225993 2492 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 AC126257.2-201ENSMUST00000215507 2300 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col28a1Q2UY11 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm5863-201ENSMUST00000121760 1008 ntBASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm27682-201ENSMUST00000183930 110 ntBASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm38266-201ENSMUST00000194931 421 ntBASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 74.7 ms