Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.79□□□□□ -0.36
Usp4P35123 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Gm13369-201ENSMUST00000119442 987 ntBASIC12.79□□□□□ -0.36
Usp4P35123 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC12.79□□□□□ -0.36
Usp4P35123 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.79□□□□□ -0.36
Usp4P35123 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.79□□□□□ -0.36
Usp4P35123 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.79□□□□□ -0.36
Usp4P35123 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Gm37497-201ENSMUST00000195830 798 ntBASIC12.79□□□□□ -0.36
Usp4P35123 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Gm5620-201ENSMUST00000077991 1348 ntBASIC12.79□□□□□ -0.36
Usp4P35123 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Usp4P35123 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC12.78□□□□□ -0.36
Usp4P35123 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.78□□□□□ -0.36
Usp4P35123 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.78□□□□□ -0.36
Usp4P35123 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Rmrp-201ENSMUST00000157463 271 ntBASIC12.78□□□□□ -0.36
Usp4P35123 Gm17208-201ENSMUST00000168388 535 ntBASIC12.78□□□□□ -0.36
Usp4P35123 Gm26927-201ENSMUST00000182385 965 ntBASIC12.78□□□□□ -0.36
Usp4P35123 AL732506.1-201ENSMUST00000226420 281 ntBASIC12.78□□□□□ -0.36
Usp4P35123 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.78□□□□□ -0.36
Usp4P35123 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.78□□□□□ -0.36
Usp4P35123 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC12.78□□□□□ -0.36
Usp4P35123 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Usp4P35123 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Usp4P35123 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
Usp4P35123 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.77□□□□□ -0.36
Usp4P35123 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Usp4P35123 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Usp4P35123 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Usp4P35123 Gm11637-201ENSMUST00000120601 592 ntBASIC12.77□□□□□ -0.37
Usp4P35123 Gm16479-201ENSMUST00000121706 932 ntBASIC12.77□□□□□ -0.37
Usp4P35123 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Usp4P35123 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Usp4P35123 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Usp4P35123 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.77□□□□□ -0.37
Usp4P35123 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.77□□□□□ -0.37
Usp4P35123 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.77□□□□□ -0.37
Usp4P35123 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Usp4P35123 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Usp4P35123 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC12.77□□□□□ -0.37
Usp4P35123 Gm4034-201ENSMUST00000187674 480 ntBASIC12.77□□□□□ -0.37
Usp4P35123 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC12.77□□□□□ -0.37
Usp4P35123 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms