Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chmp6P0C0A3 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chmp6P0C0A3 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chmp6P0C0A3 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.31□□□□□ -0.28
Chmp6P0C0A3 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
Chmp6P0C0A3 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Chmp6P0C0A3 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Chmp6P0C0A3 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chmp6P0C0A3 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 AC157950.1-201ENSMUST00000217561 2168 ntBASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Gm29100-201ENSMUST00000187564 4410 ntBASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Chmp6P0C0A3 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Gm13570-201ENSMUST00000140763 309 ntBASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Chmp6P0C0A3 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Gm23270-201ENSMUST00000104055 131 ntBASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Gm27243-201ENSMUST00000183964 521 ntBASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Gm21769-201ENSMUST00000211922 111 ntBASIC13.28□□□□□ -0.28
Chmp6P0C0A3 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 AC154171.1-201ENSMUST00000224610 643 ntBASIC13.28□□□□□ -0.28
Chmp6P0C0A3 AC113031.8-201ENSMUST00000227856 631 ntBASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Gm4864-201ENSMUST00000219894 1461 ntBASIC13.28□□□□□ -0.28
Chmp6P0C0A3 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 AC127597.1-201ENSMUST00000225697 5711 ntBASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
Chmp6P0C0A3 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Chmp6P0C0A3 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Chmp6P0C0A3 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Chmp6P0C0A3 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms