Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC11.94□□□□□ -0.5
Chd3B1AR17 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Chd3B1AR17 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Chd3B1AR17 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Chd3B1AR17 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm6397-201ENSMUST00000161973 1069 ntBASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm7551-201ENSMUST00000089593 1074 ntBASIC11.93□□□□□ -0.5
Chd3B1AR17 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm12164-201ENSMUST00000121695 551 ntBASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC11.93□□□□□ -0.5
Chd3B1AR17 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm8343-201ENSMUST00000182705 994 ntBASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm28686-201ENSMUST00000187404 609 ntBASIC11.93□□□□□ -0.5
Chd3B1AR17 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC11.93□□□□□ -0.5
Chd3B1AR17 Gm21027-201ENSMUST00000219300 1236 ntBASIC11.93□□□□□ -0.5
Chd3B1AR17 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Chd3B1AR17 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC11.92□□□□□ -0.5
Chd3B1AR17 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.92□□□□□ -0.5
Chd3B1AR17 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Chd3B1AR17 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC11.92□□□□□ -0.5
Chd3B1AR17 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.92□□□□□ -0.5
Chd3B1AR17 Gm8285-201ENSMUST00000208293 759 ntBASIC11.92□□□□□ -0.5
Chd3B1AR17 Gm44551-201ENSMUST00000208804 171 ntBASIC11.92□□□□□ -0.5
Chd3B1AR17 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.92□□□□□ -0.5
Chd3B1AR17 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Gm6580-201ENSMUST00000117504 1357 ntBASIC11.92□□□□□ -0.5
Chd3B1AR17 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Chd3B1AR17 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.92□□□□□ -0.5
Chd3B1AR17 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Chd3B1AR17 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Chd3B1AR17 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 86.6 ms