Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Trim3Q9R1R2 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC11.52□□□□□ -0.57
Trim3Q9R1R2 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Gm45865-201ENSMUST00000211815 945 ntBASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Gm7172-201ENSMUST00000218047 1152 ntBASIC11.52□□□□□ -0.57
Trim3Q9R1R2 AC132384.14-201ENSMUST00000219346 1147 ntBASIC11.52□□□□□ -0.57
Trim3Q9R1R2 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC11.52□□□□□ -0.57
Trim3Q9R1R2 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gm6621-201ENSMUST00000193251 772 ntBASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gm6334-201ENSMUST00000207083 228 ntBASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gm22058-201ENSMUST00000083393 310 ntBASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gm7224-201ENSMUST00000121359 2066 ntBASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Trim3Q9R1R2 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Trim3Q9R1R2 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms