Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm19963-201ENSMUST00000208413 1255 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 AC114573.1-201ENSMUST00000224120 1210 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm10076-201ENSMUST00000073238 384 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm19221-201ENSMUST00000221827 1477 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Gm14667-201ENSMUST00000119448 1350 ntBASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Gm11222-201ENSMUST00000119005 738 ntBASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Gm28707-201ENSMUST00000186134 558 ntTSL 3 BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Gm37436-201ENSMUST00000193842 1085 ntBASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Gm35638-201ENSMUST00000220724 652 ntBASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 AC166095.1-201ENSMUST00000223731 1241 ntBASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Gm24136-201ENSMUST00000083374 165 ntBASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Prpf40aQ9R1C7 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Gm29331-201ENSMUST00000187215 605 ntTSL 5 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 AC132384.14-201ENSMUST00000219346 1147 ntBASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Ptprm-203ENSMUST00000224091 3773 ntBASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Prpf40aQ9R1C7 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Prpf40aQ9R1C7 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.26
Prpf40aQ9R1C7 Cd59a-201ENSMUST00000040423 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Prpf40aQ9R1C7 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Prpf40aQ9R1C7 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Prpf40aQ9R1C7 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Prpf40aQ9R1C7 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.26
Prpf40aQ9R1C7 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms