Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm42913-201ENSMUST00000197936 1853 ntBASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm43172-201ENSMUST00000202139 2137 ntBASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm10339-203ENSMUST00000225409 1671 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm1335-201ENSMUST00000121653 386 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm10156-201ENSMUST00000122364 462 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm27516-201ENSMUST00000184237 98 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm38002-201ENSMUST00000193255 180 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm44772-201ENSMUST00000207623 1191 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm42498-201ENSMUST00000199981 1372 ntBASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Col28a1Q2UY11 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm43267-201ENSMUST00000199664 1796 ntBASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm7584-201ENSMUST00000175829 940 ntBASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm27501-201ENSMUST00000183599 107 ntBASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm6652-201ENSMUST00000186414 1070 ntBASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm18827-201ENSMUST00000188341 790 ntBASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm45930-201ENSMUST00000221330 292 ntBASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm24526-201ENSMUST00000082921 158 ntBASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col28a1Q2UY11 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms