Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Gm13323-201ENSMUST00000120245 1151 ntBASIC13.52□□□□□ -0.25
Col6a1Q04857 Mup-ps26-201ENSMUST00000121751 202 ntBASIC13.52□□□□□ -0.25
Col6a1Q04857 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Gm19994-201ENSMUST00000217086 586 ntBASIC13.52□□□□□ -0.25
Col6a1Q04857 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Prrxl1-205ENSMUST00000228878 723 ntBASIC13.52□□□□□ -0.25
Col6a1Q04857 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Gm9387-201ENSMUST00000098624 1320 ntBASIC13.52□□□□□ -0.25
Col6a1Q04857 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col6a1Q04857 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm23596-201ENSMUST00000104304 132 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm23085-201ENSMUST00000157849 293 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Mir7076-201ENSMUST00000183519 74 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm42937-201ENSMUST00000197360 752 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm17889-201ENSMUST00000198410 598 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.51□□□□□ -0.25
Col6a1Q04857 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm43962-201ENSMUST00000203898 190 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 AC153505.1-201ENSMUST00000218819 1071 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 AC154290.1-201ENSMUST00000223786 1240 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Col6a1Q04857 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC13.51□□□□□ -0.25
Col6a1Q04857 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Gm17435-202ENSMUST00000212699 1998 ntBASIC13.51□□□□□ -0.25
Col6a1Q04857 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col6a1Q04857 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Col6a1Q04857 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.5□□□□□ -0.25
Col6a1Q04857 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.5□□□□□ -0.25
Col6a1Q04857 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC13.5□□□□□ -0.25
Col6a1Q04857 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Gm37028-201ENSMUST00000194276 107 ntBASIC13.5□□□□□ -0.25
Col6a1Q04857 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms