Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Rfx1P48377 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Rfx1P48377 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC14.57□□□□□ -0.08
Rfx1P48377 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
Rfx1P48377 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC14.57□□□□□ -0.08
Rfx1P48377 AC069562.3-201ENSMUST00000225387 587 ntBASIC14.57□□□□□ -0.08
Rfx1P48377 AC108416.1-202ENSMUST00000228927 1201 ntBASIC14.57□□□□□ -0.08
Rfx1P48377 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Rfx1P48377 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC14.57□□□□□ -0.08
Rfx1P48377 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Rfx1P48377 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC14.57□□□□□ -0.08
Rfx1P48377 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.57□□□□□ -0.08
Rfx1P48377 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Gm9816-201ENSMUST00000122292 1414 ntBASIC14.57□□□□□ -0.08
Rfx1P48377 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rfx1P48377 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
Rfx1P48377 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC14.56□□□□□ -0.08
Rfx1P48377 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Rfx1P48377 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Rfx1P48377 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Rfx1P48377 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Gm13315-201ENSMUST00000120376 991 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Gm11918-201ENSMUST00000121660 179 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC14.56□□□□□ -0.08
Rfx1P48377 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC14.56□□□□□ -0.08
Rfx1P48377 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC14.56□□□□□ -0.08
Rfx1P48377 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Gm6244-201ENSMUST00000178732 841 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Gm18304-201ENSMUST00000189162 546 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Gm29705-201ENSMUST00000212598 474 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC14.56□□□□□ -0.08
Rfx1P48377 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 CT030657.3-201ENSMUST00000222707 1200 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Rfx1P48377 Gm9115-201ENSMUST00000120192 1348 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Gm13050-201ENSMUST00000122149 1345 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Rfx1P48377 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Rfx1P48377 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC14.56□□□□□ -0.08
Rfx1P48377 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Rfx1P48377 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rfx1P48377 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC14.56□□□□□ -0.08
Rfx1P48377 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC14.55□□□□□ -0.08
Rfx1P48377 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC14.55□□□□□ -0.08
Rfx1P48377 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Rfx1P48377 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Gm9083-201ENSMUST00000120423 819 ntBASIC14.55□□□□□ -0.08
Rfx1P48377 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.55□□□□□ -0.08
Rfx1P48377 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC14.55□□□□□ -0.08
Rfx1P48377 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC14.55□□□□□ -0.08
Rfx1P48377 Gm19891-201ENSMUST00000189771 303 ntBASIC14.55□□□□□ -0.08
Rfx1P48377 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC14.55□□□□□ -0.08
Rfx1P48377 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Gm7067-201ENSMUST00000207698 1249 ntBASIC14.55□□□□□ -0.08
Rfx1P48377 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC14.55□□□□□ -0.08
Rfx1P48377 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Rfx1P48377 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms