Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC11.59□□□□□ -0.55
Cdx2P43241 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Cdx2P43241 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Cdx2P43241 Gm37844-201ENSMUST00000192473 4097 ntBASIC11.59□□□□□ -0.55
Cdx2P43241 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx2P43241 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
Cdx2P43241 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC11.58□□□□□ -0.56
Cdx2P43241 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC11.58□□□□□ -0.56
Cdx2P43241 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC11.58□□□□□ -0.56
Cdx2P43241 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC11.58□□□□□ -0.56
Cdx2P43241 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Cdx2P43241 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Gm11451-201ENSMUST00000118946 630 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Gm1848-201ENSMUST00000120711 789 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Gm11660-201ENSMUST00000120955 412 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC11.58□□□□□ -0.56
Cdx2P43241 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC11.58□□□□□ -0.56
Cdx2P43241 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Rn7s6-201ENSMUST00000175005 291 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC11.58□□□□□ -0.56
Cdx2P43241 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Mir8115-201ENSMUST00000184992 119 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Gm9645-201ENSMUST00000197131 792 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Gm43186-201ENSMUST00000198130 824 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC11.58□□□□□ -0.56
Cdx2P43241 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC11.58□□□□□ -0.56
Cdx2P43241 AC115122.1-201ENSMUST00000224850 1040 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Gm6430-201ENSMUST00000054664 1248 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Cdx2P43241 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Cdx2P43241 Mirlet7i-201ENSMUST00000083472 85 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Cdx2P43241 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Cdx2P43241 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Cdx2P43241 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Gm5385-201ENSMUST00000118988 1559 ntBASIC11.58□□□□□ -0.56
Cdx2P43241 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cdx2P43241 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
Cdx2P43241 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC11.57□□□□□ -0.56
Cdx2P43241 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Cdx2P43241 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Cdx2P43241 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Cdx2P43241 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Cdx2P43241 Gm14193-201ENSMUST00000105067 153 ntBASIC11.57□□□□□ -0.56
Cdx2P43241 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx2P43241 Gm13916-201ENSMUST00000117368 628 ntBASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms