Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Gm12058-201ENSMUST00000118614 437 ntBASIC13.2□□□□□ -0.3
RaraP11416 Gm14660-201ENSMUST00000119809 575 ntBASIC13.2□□□□□ -0.3
RaraP11416 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Gm13570-201ENSMUST00000140763 309 ntBASIC13.2□□□□□ -0.3
RaraP11416 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC13.2□□□□□ -0.3
RaraP11416 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
RaraP11416 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC13.2□□□□□ -0.3
RaraP11416 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC13.2□□□□□ -0.3
RaraP11416 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
RaraP11416 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC13.2□□□□□ -0.3
RaraP11416 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
RaraP11416 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC13.19□□□□□ -0.3
RaraP11416 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
RaraP11416 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 AC126257.2-201ENSMUST00000215507 2300 ntBASIC13.19□□□□□ -0.3
RaraP11416 Gm43447-201ENSMUST00000198471 1535 ntBASIC13.19□□□□□ -0.3
RaraP11416 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC13.19□□□□□ -0.3
RaraP11416 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC13.19□□□□□ -0.3
RaraP11416 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.19□□□□□ -0.3
RaraP11416 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC13.19□□□□□ -0.3
RaraP11416 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Gm8565-201ENSMUST00000183259 1014 ntBASIC13.19□□□□□ -0.3
RaraP11416 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC13.19□□□□□ -0.3
RaraP11416 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC13.19□□□□□ -0.3
RaraP11416 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Thoc7-209ENSMUST00000225325 765 ntBASIC13.19□□□□□ -0.3
RaraP11416 AC126253.1-201ENSMUST00000227974 824 ntBASIC13.19□□□□□ -0.3
RaraP11416 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Gm45428-201ENSMUST00000209619 1789 ntBASIC13.19□□□□□ -0.3
RaraP11416 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
RaraP11416 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RaraP11416 Gm12846-201ENSMUST00000120431 1373 ntBASIC13.19□□□□□ -0.3
RaraP11416 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
RaraP11416 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC13.18□□□□□ -0.3
RaraP11416 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
RaraP11416 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC13.18□□□□□ -0.3
RaraP11416 Gm13142-201ENSMUST00000117213 1453 ntBASIC13.18□□□□□ -0.3
RaraP11416 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Gm37737-201ENSMUST00000195013 1638 ntBASIC13.18□□□□□ -0.3
RaraP11416 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Gm14716-201ENSMUST00000120138 718 ntBASIC13.18□□□□□ -0.3
RaraP11416 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
RaraP11416 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC13.18□□□□□ -0.3
RaraP11416 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.18□□□□□ -0.3
RaraP11416 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.18□□□□□ -0.3
RaraP11416 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC13.18□□□□□ -0.3
RaraP11416 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
RaraP11416 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RaraP11416 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC13.18□□□□□ -0.3
RaraP11416 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 97.8 ms