Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Col3a1P08121 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Col3a1P08121 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 CT009489.1-201ENSMUST00000227740 1893 ntBASIC14.41□□□□□ -0.1
Col3a1P08121 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Col3a1P08121 Gm14585-201ENSMUST00000120713 634 ntBASIC14.41□□□□□ -0.1
Col3a1P08121 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC14.41□□□□□ -0.1
Col3a1P08121 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC14.41□□□□□ -0.1
Col3a1P08121 Gm18367-201ENSMUST00000176139 600 ntBASIC14.41□□□□□ -0.1
Col3a1P08121 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC14.41□□□□□ -0.1
Col3a1P08121 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Col3a1P08121 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC14.41□□□□□ -0.1
Col3a1P08121 Gm6114-201ENSMUST00000182472 968 ntBASIC14.41□□□□□ -0.1
Col3a1P08121 Mir7076-201ENSMUST00000183519 74 ntBASIC14.41□□□□□ -0.1
Col3a1P08121 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Col3a1P08121 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC14.41□□□□□ -0.1
Col3a1P08121 Gm43520-201ENSMUST00000197996 164 ntBASIC14.41□□□□□ -0.1
Col3a1P08121 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC14.41□□□□□ -0.1
Col3a1P08121 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Col3a1P08121 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col3a1P08121 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Col3a1P08121 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.4□□□□□ -0.1
Col3a1P08121 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC14.4□□□□□ -0.1
Col3a1P08121 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Col3a1P08121 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Gm11949-201ENSMUST00000117640 372 ntBASIC14.4□□□□□ -0.1
Col3a1P08121 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Gm10807-201ENSMUST00000177134 795 ntBASIC14.4□□□□□ -0.1
Col3a1P08121 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Gm5542-201ENSMUST00000195485 1089 ntBASIC14.4□□□□□ -0.1
Col3a1P08121 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC14.4□□□□□ -0.1
Col3a1P08121 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC14.4□□□□□ -0.1
Col3a1P08121 Gm44506-201ENSMUST00000206278 965 ntBASIC14.4□□□□□ -0.1
Col3a1P08121 Gm6108-201ENSMUST00000208365 367 ntBASIC14.4□□□□□ -0.1
Col3a1P08121 AC153929.1-201ENSMUST00000219009 303 ntBASIC14.4□□□□□ -0.1
Col3a1P08121 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC14.4□□□□□ -0.1
Col3a1P08121 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC14.4□□□□□ -0.1
Col3a1P08121 Gm8522-201ENSMUST00000118416 1929 ntBASIC14.4□□□□□ -0.1
Col3a1P08121 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Col3a1P08121 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col3a1P08121 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Col3a1P08121 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.11
Col3a1P08121 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC14.39□□□□□ -0.11
Col3a1P08121 Gm18983-201ENSMUST00000222884 2729 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Gm11956-201ENSMUST00000119525 512 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 Gm16071-201ENSMUST00000119589 793 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 Gm8459-201ENSMUST00000162504 760 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Gm5778-201ENSMUST00000171003 1072 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC14.39□□□□□ -0.11
Col3a1P08121 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC14.39□□□□□ -0.11
Col3a1P08121 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms