Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Cstf1Q99LC2 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cstf1Q99LC2 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Cstf1Q99LC2 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cstf1Q99LC2 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
Cstf1Q99LC2 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cstf1Q99LC2 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cstf1Q99LC2 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Cstf1Q99LC2 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Cstf1Q99LC2 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cstf1Q99LC2 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
Cstf1Q99LC2 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Gm42569-201ENSMUST00000200539 472 ntBASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Krt8-ps-201ENSMUST00000208495 945 ntBASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.74■□□□□ 0.91
Cstf1Q99LC2 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cstf1Q99LC2 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
Cstf1Q99LC2 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.72■□□□□ 0.91
Cstf1Q99LC2 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cstf1Q99LC2 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Cstf1Q99LC2 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cstf1Q99LC2 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cstf1Q99LC2 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC20.71■□□□□ 0.91
Cstf1Q99LC2 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Cstf1Q99LC2 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cstf1Q99LC2 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cstf1Q99LC2 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.71■□□□□ 0.91
Cstf1Q99LC2 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cstf1Q99LC2 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Gm27405-201ENSMUST00000184201 112 ntBASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Gm43173-201ENSMUST00000202246 593 ntBASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.7■□□□□ 0.9
Cstf1Q99LC2 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cstf1Q99LC2 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Gm26571-201ENSMUST00000181399 666 ntBASIC20.69■□□□□ 0.9
Cstf1Q99LC2 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cstf1Q99LC2 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Cstf1Q99LC2 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.68■□□□□ 0.9
Cstf1Q99LC2 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cstf1Q99LC2 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cstf1Q99LC2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cstf1Q99LC2 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cstf1Q99LC2 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Cstf1Q99LC2 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cstf1Q99LC2 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms