Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Usp47Q8BY87 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC29.72■■■□□ 2.35
Usp47Q8BY87 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC29.72■■■□□ 2.35
Usp47Q8BY87 Gm9847-201ENSMUST00000052528 599 ntBASIC29.72■■■□□ 2.35
Usp47Q8BY87 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Usp47Q8BY87 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC29.72■■■□□ 2.35
Usp47Q8BY87 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
Usp47Q8BY87 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Usp47Q8BY87 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
Usp47Q8BY87 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC29.71■■■□□ 2.35
Usp47Q8BY87 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Usp47Q8BY87 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Usp47Q8BY87 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
Usp47Q8BY87 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC29.7■■■□□ 2.35
Usp47Q8BY87 Golgb1-201ENSMUST00000023534 498 ntBASIC29.7■■■□□ 2.35
Usp47Q8BY87 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC29.7■■■□□ 2.35
Usp47Q8BY87 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Usp47Q8BY87 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC29.7■■■□□ 2.34
Usp47Q8BY87 Gm17641-201ENSMUST00000166328 2350 ntBASIC29.69■■■□□ 2.34
Usp47Q8BY87 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC29.69■■■□□ 2.34
Usp47Q8BY87 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC29.69■■■□□ 2.34
Usp47Q8BY87 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC29.69■■■□□ 2.34
Usp47Q8BY87 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC29.69■■■□□ 2.34
Usp47Q8BY87 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Usp47Q8BY87 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
Usp47Q8BY87 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Usp47Q8BY87 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC29.69■■■□□ 2.34
Usp47Q8BY87 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Usp47Q8BY87 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
Usp47Q8BY87 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Usp47Q8BY87 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
Usp47Q8BY87 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC29.68■■■□□ 2.34
Usp47Q8BY87 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Usp47Q8BY87 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Usp47Q8BY87 Gm13241-201ENSMUST00000094493 780 ntBASIC29.67■■■□□ 2.34
Usp47Q8BY87 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC29.67■■■□□ 2.34
Usp47Q8BY87 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
Usp47Q8BY87 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Usp47Q8BY87 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC29.66■■■□□ 2.34
Usp47Q8BY87 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC29.66■■■□□ 2.34
Usp47Q8BY87 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Usp47Q8BY87 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Usp47Q8BY87 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Usp47Q8BY87 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Usp47Q8BY87 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
Usp47Q8BY87 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC29.65■■■□□ 2.34
Usp47Q8BY87 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
Usp47Q8BY87 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
Usp47Q8BY87 Gm9870-201ENSMUST00000063874 645 ntBASIC29.64■■■□□ 2.34
Usp47Q8BY87 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Usp47Q8BY87 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Usp47Q8BY87 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Usp47Q8BY87 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.33
Usp47Q8BY87 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC29.64■■■□□ 2.33
Usp47Q8BY87 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
Usp47Q8BY87 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
Usp47Q8BY87 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC29.63■■■□□ 2.33
Usp47Q8BY87 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC29.63■■■□□ 2.33
Usp47Q8BY87 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Usp47Q8BY87 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC29.62■■■□□ 2.33
Usp47Q8BY87 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC29.62■■■□□ 2.33
Usp47Q8BY87 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
Usp47Q8BY87 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
Usp47Q8BY87 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Usp47Q8BY87 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
Usp47Q8BY87 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
Usp47Q8BY87 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Usp47Q8BY87 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Usp47Q8BY87 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Usp47Q8BY87 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC29.6■■■□□ 2.33
Usp47Q8BY87 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Usp47Q8BY87 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Usp47Q8BY87 Gm7143-201ENSMUST00000222811 859 ntBASIC29.59■■■□□ 2.33
Usp47Q8BY87 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC29.58■■■□□ 2.33
Usp47Q8BY87 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
Usp47Q8BY87 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC29.57■■■□□ 2.32
Usp47Q8BY87 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
Usp47Q8BY87 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
Usp47Q8BY87 Gm10657-201ENSMUST00000193528 1031 ntBASIC29.56■■■□□ 2.32
Usp47Q8BY87 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Usp47Q8BY87 Gm43034-201ENSMUST00000198678 1364 ntBASIC29.56■■■□□ 2.32
Usp47Q8BY87 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
Usp47Q8BY87 Gm32051-202ENSMUST00000197905 2385 ntBASIC29.55■■■□□ 2.32
Usp47Q8BY87 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Usp47Q8BY87 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
Usp47Q8BY87 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC29.55■■■□□ 2.32
Usp47Q8BY87 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
Usp47Q8BY87 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC29.55■■■□□ 2.32
Usp47Q8BY87 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Usp47Q8BY87 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Usp47Q8BY87 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Usp47Q8BY87 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC29.54■■■□□ 2.32
Usp47Q8BY87 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Usp47Q8BY87 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC29.54■■■□□ 2.32
Usp47Q8BY87 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
Usp47Q8BY87 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Usp47Q8BY87 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC29.54■■■□□ 2.32
Usp47Q8BY87 Dmtn-209ENSMUST00000228295 2572 ntBASIC29.54■■■□□ 2.32
Usp47Q8BY87 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
Usp47Q8BY87 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms