Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Six3Q62233 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Six3Q62233 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Six3Q62233 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Six3Q62233 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC20.29■□□□□ 0.84
Six3Q62233 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six3Q62233 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Six3Q62233 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six3Q62233 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Six3Q62233 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six3Q62233 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six3Q62233 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six3Q62233 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
Six3Q62233 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Six3Q62233 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC20.27■□□□□ 0.84
Six3Q62233 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Six3Q62233 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.27■□□□□ 0.84
Six3Q62233 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six3Q62233 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six3Q62233 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.26■□□□□ 0.83
Six3Q62233 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.26■□□□□ 0.83
Six3Q62233 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.26■□□□□ 0.83
Six3Q62233 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Six3Q62233 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six3Q62233 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Six3Q62233 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six3Q62233 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Six3Q62233 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Six3Q62233 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six3Q62233 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.25■□□□□ 0.83
Six3Q62233 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six3Q62233 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six3Q62233 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six3Q62233 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six3Q62233 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Six3Q62233 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six3Q62233 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six3Q62233 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six3Q62233 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Six3Q62233 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Six3Q62233 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
Six3Q62233 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.24■□□□□ 0.83
Six3Q62233 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six3Q62233 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Six3Q62233 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Six3Q62233 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.23■□□□□ 0.83
Six3Q62233 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six3Q62233 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Six3Q62233 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Six3Q62233 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six3Q62233 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Six3Q62233 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six3Q62233 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.22■□□□□ 0.83
Six3Q62233 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.22■□□□□ 0.83
Six3Q62233 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Six3Q62233 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six3Q62233 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six3Q62233 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six3Q62233 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Six3Q62233 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six3Q62233 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Six3Q62233 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.21■□□□□ 0.83
Six3Q62233 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.21■□□□□ 0.83
Six3Q62233 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six3Q62233 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Six3Q62233 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six3Q62233 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Six3Q62233 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.2■□□□□ 0.82
Six3Q62233 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.2■□□□□ 0.82
Six3Q62233 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms