Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usf1Q61069 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.09■□□□□ 0.65
Usf1Q61069 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usf1Q61069 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usf1Q61069 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Usf1Q61069 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
Usf1Q61069 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Usf1Q61069 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usf1Q61069 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usf1Q61069 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usf1Q61069 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
Usf1Q61069 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usf1Q61069 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.07■□□□□ 0.64
Usf1Q61069 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.07■□□□□ 0.64
Usf1Q61069 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Usf1Q61069 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Usf1Q61069 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usf1Q61069 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usf1Q61069 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usf1Q61069 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usf1Q61069 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC19.07■□□□□ 0.64
Usf1Q61069 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Usf1Q61069 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usf1Q61069 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
Usf1Q61069 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.06■□□□□ 0.64
Usf1Q61069 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Usf1Q61069 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.06■□□□□ 0.64
Usf1Q61069 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usf1Q61069 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usf1Q61069 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usf1Q61069 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usf1Q61069 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usf1Q61069 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usf1Q61069 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usf1Q61069 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Usf1Q61069 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.05■□□□□ 0.64
Usf1Q61069 Gm7143-201ENSMUST00000222811 859 ntBASIC19.05■□□□□ 0.64
Usf1Q61069 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usf1Q61069 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.05■□□□□ 0.64
Usf1Q61069 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usf1Q61069 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usf1Q61069 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.04■□□□□ 0.64
Usf1Q61069 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usf1Q61069 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Usf1Q61069 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usf1Q61069 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usf1Q61069 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usf1Q61069 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usf1Q61069 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.03■□□□□ 0.64
Usf1Q61069 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Usf1Q61069 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC19.03■□□□□ 0.64
Usf1Q61069 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usf1Q61069 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Usf1Q61069 Gm12251-201ENSMUST00000117893 792 ntBASIC19.02■□□□□ 0.64
Usf1Q61069 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.02■□□□□ 0.64
Usf1Q61069 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usf1Q61069 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usf1Q61069 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Usf1Q61069 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Usf1Q61069 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.01■□□□□ 0.63
Usf1Q61069 Gm26833-201ENSMUST00000180899 440 ntBASIC19.01■□□□□ 0.63
Usf1Q61069 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.01■□□□□ 0.63
Usf1Q61069 Gm7160-202ENSMUST00000188519 1027 ntBASIC19.01■□□□□ 0.63
Usf1Q61069 Gm42569-201ENSMUST00000200539 472 ntBASIC19.01■□□□□ 0.63
Usf1Q61069 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usf1Q61069 Gm10493-201ENSMUST00000097270 612 ntBASIC19.01■□□□□ 0.63
Usf1Q61069 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.01■□□□□ 0.63
Usf1Q61069 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usf1Q61069 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usf1Q61069 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usf1Q61069 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usf1Q61069 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19■□□□□ 0.63
Usf1Q61069 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usf1Q61069 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19■□□□□ 0.63
Usf1Q61069 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19■□□□□ 0.63
Usf1Q61069 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usf1Q61069 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Usf1Q61069 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.99■□□□□ 0.63
Usf1Q61069 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Usf1Q61069 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usf1Q61069 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Usf1Q61069 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.99■□□□□ 0.63
Usf1Q61069 Gm27405-201ENSMUST00000184201 112 ntBASIC18.99■□□□□ 0.63
Usf1Q61069 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usf1Q61069 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Usf1Q61069 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usf1Q61069 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usf1Q61069 Gm26571-201ENSMUST00000181399 666 ntBASIC18.98■□□□□ 0.63
Usf1Q61069 Gm43060-201ENSMUST00000200621 289 ntBASIC18.98■□□□□ 0.63
Usf1Q61069 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.98■□□□□ 0.63
Usf1Q61069 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usf1Q61069 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Usf1Q61069 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usf1Q61069 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usf1Q61069 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usf1Q61069 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usf1Q61069 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Usf1Q61069 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Usf1Q61069 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
Usf1Q61069 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms