Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Nr1h4Q60641 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Nr1h4Q60641 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Nr1h4Q60641 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Nr1h4Q60641 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Nr1h4Q60641 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Nr1h4Q60641 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
Nr1h4Q60641 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Nr1h4Q60641 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nr1h4Q60641 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nr1h4Q60641 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nr1h4Q60641 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nr1h4Q60641 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nr1h4Q60641 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nr1h4Q60641 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nr1h4Q60641 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nr1h4Q60641 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nr1h4Q60641 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Nr1h4Q60641 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.71■□□□□ 0.75
Nr1h4Q60641 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Nr1h4Q60641 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Nr1h4Q60641 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nr1h4Q60641 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nr1h4Q60641 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nr1h4Q60641 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nr1h4Q60641 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.7■□□□□ 0.74
Nr1h4Q60641 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nr1h4Q60641 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Nr1h4Q60641 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nr1h4Q60641 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.7■□□□□ 0.74
Nr1h4Q60641 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nr1h4Q60641 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nr1h4Q60641 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nr1h4Q60641 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nr1h4Q60641 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.69■□□□□ 0.74
Nr1h4Q60641 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC19.69■□□□□ 0.74
Nr1h4Q60641 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nr1h4Q60641 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nr1h4Q60641 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.68■□□□□ 0.74
Nr1h4Q60641 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Nr1h4Q60641 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nr1h4Q60641 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Nr1h4Q60641 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nr1h4Q60641 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nr1h4Q60641 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Nr1h4Q60641 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.67■□□□□ 0.74
Nr1h4Q60641 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.67■□□□□ 0.74
Nr1h4Q60641 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Nr1h4Q60641 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Nr1h4Q60641 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nr1h4Q60641 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nr1h4Q60641 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nr1h4Q60641 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Nr1h4Q60641 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nr1h4Q60641 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.66■□□□□ 0.74
Nr1h4Q60641 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.66■□□□□ 0.74
Nr1h4Q60641 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Nr1h4Q60641 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nr1h4Q60641 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Nr1h4Q60641 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Nr1h4Q60641 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Nr1h4Q60641 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Nr1h4Q60641 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Nr1h4Q60641 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Nr1h4Q60641 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Nr1h4Q60641 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Nr1h4Q60641 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nr1h4Q60641 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nr1h4Q60641 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nr1h4Q60641 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nr1h4Q60641 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
Nr1h4Q60641 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.64■□□□□ 0.73
Nr1h4Q60641 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nr1h4Q60641 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.63■□□□□ 0.73
Nr1h4Q60641 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nr1h4Q60641 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nr1h4Q60641 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nr1h4Q60641 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nr1h4Q60641 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nr1h4Q60641 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC19.62■□□□□ 0.73
Nr1h4Q60641 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Nr1h4Q60641 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nr1h4Q60641 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nr1h4Q60641 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.62■□□□□ 0.73
Nr1h4Q60641 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nr1h4Q60641 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Nr1h4Q60641 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Nr1h4Q60641 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Nr1h4Q60641 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Nr1h4Q60641 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
Nr1h4Q60641 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Nr1h4Q60641 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms