Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Gm8770-201ENSMUST00000121113 1109 ntBASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Gm21168-201ENSMUST00000199646 1096 ntBASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Slc35b2-207ENSMUST00000226086 850 ntBASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Upf3aQ3ULJ3 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Upf3aQ3ULJ3 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Upf3aQ3ULJ3 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
Upf3aQ3ULJ3 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Upf3aQ3ULJ3 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC22.02■■□□□ 1.12
Upf3aQ3ULJ3 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Upf3aQ3ULJ3 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Upf3aQ3ULJ3 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Upf3aQ3ULJ3 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
Upf3aQ3ULJ3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.11
Upf3aQ3ULJ3 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Upf3aQ3ULJ3 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC22.01■■□□□ 1.11
Upf3aQ3ULJ3 Gm43017-201ENSMUST00000198296 752 ntBASIC22.01■■□□□ 1.11
Upf3aQ3ULJ3 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Upf3aQ3ULJ3 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC22■■□□□ 1.11
Upf3aQ3ULJ3 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC22■■□□□ 1.11
Upf3aQ3ULJ3 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Upf3aQ3ULJ3 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Upf3aQ3ULJ3 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC22■■□□□ 1.11
Upf3aQ3ULJ3 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Upf3aQ3ULJ3 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 Gm8493-201ENSMUST00000196881 489 ntBASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Upf3aQ3ULJ3 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Upf3aQ3ULJ3 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Upf3aQ3ULJ3 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Upf3aQ3ULJ3 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.97■■□□□ 1.11
Upf3aQ3ULJ3 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.97■■□□□ 1.11
Upf3aQ3ULJ3 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Upf3aQ3ULJ3 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Upf3aQ3ULJ3 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Upf3aQ3ULJ3 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
Upf3aQ3ULJ3 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Upf3aQ3ULJ3 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.96■■□□□ 1.11
Upf3aQ3ULJ3 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.96■■□□□ 1.11
Upf3aQ3ULJ3 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Upf3aQ3ULJ3 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Upf3aQ3ULJ3 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Upf3aQ3ULJ3 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Upf3aQ3ULJ3 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Upf3aQ3ULJ3 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Upf3aQ3ULJ3 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Upf3aQ3ULJ3 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms