Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Limch1Q3UH68 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC24.45■■□□□ 1.5
Limch1Q3UH68 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC24.45■■□□□ 1.5
Limch1Q3UH68 AC116713.1-201ENSMUST00000215074 430 ntBASIC24.44■■□□□ 1.5
Limch1Q3UH68 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Limch1Q3UH68 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
Limch1Q3UH68 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Limch1Q3UH68 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC24.44■■□□□ 1.5
Limch1Q3UH68 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC24.43■■□□□ 1.5
Limch1Q3UH68 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC24.43■■□□□ 1.5
Limch1Q3UH68 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC24.43■■□□□ 1.5
Limch1Q3UH68 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Limch1Q3UH68 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC24.43■■□□□ 1.5
Limch1Q3UH68 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
Limch1Q3UH68 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Limch1Q3UH68 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC24.42■■□□□ 1.5
Limch1Q3UH68 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC24.42■■□□□ 1.5
Limch1Q3UH68 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Limch1Q3UH68 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Limch1Q3UH68 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Limch1Q3UH68 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
Limch1Q3UH68 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Limch1Q3UH68 Gm28536-201ENSMUST00000190971 1317 ntBASIC24.4■■□□□ 1.5
Limch1Q3UH68 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC24.4■■□□□ 1.5
Limch1Q3UH68 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC24.4■■□□□ 1.5
Limch1Q3UH68 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Limch1Q3UH68 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Limch1Q3UH68 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Limch1Q3UH68 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Limch1Q3UH68 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Limch1Q3UH68 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Limch1Q3UH68 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC24.39■■□□□ 1.49
Limch1Q3UH68 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Limch1Q3UH68 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Limch1Q3UH68 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Limch1Q3UH68 Gm11847-201ENSMUST00000125165 1119 ntBASIC24.38■■□□□ 1.49
Limch1Q3UH68 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Limch1Q3UH68 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC24.38■■□□□ 1.49
Limch1Q3UH68 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Limch1Q3UH68 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC24.38■■□□□ 1.49
Limch1Q3UH68 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Limch1Q3UH68 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Limch1Q3UH68 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC24.37■■□□□ 1.49
Limch1Q3UH68 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC24.37■■□□□ 1.49
Limch1Q3UH68 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Limch1Q3UH68 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Limch1Q3UH68 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC24.37■■□□□ 1.49
Limch1Q3UH68 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Limch1Q3UH68 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC24.36■■□□□ 1.49
Limch1Q3UH68 Gm7417-201ENSMUST00000192950 473 ntBASIC24.36■■□□□ 1.49
Limch1Q3UH68 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Limch1Q3UH68 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Limch1Q3UH68 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Limch1Q3UH68 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Limch1Q3UH68 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Limch1Q3UH68 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Limch1Q3UH68 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC24.35■■□□□ 1.49
Limch1Q3UH68 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC24.35■■□□□ 1.49
Limch1Q3UH68 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Limch1Q3UH68 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Limch1Q3UH68 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Limch1Q3UH68 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Limch1Q3UH68 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Limch1Q3UH68 Kdm3b-204ENSMUST00000224715 2032 ntBASIC24.34■■□□□ 1.49
Limch1Q3UH68 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC24.34■■□□□ 1.49
Limch1Q3UH68 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Limch1Q3UH68 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Limch1Q3UH68 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Limch1Q3UH68 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Limch1Q3UH68 Gm8093-201ENSMUST00000128935 1892 ntBASIC24.32■■□□□ 1.48
Limch1Q3UH68 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Limch1Q3UH68 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC24.32■■□□□ 1.48
Limch1Q3UH68 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Limch1Q3UH68 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Limch1Q3UH68 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Limch1Q3UH68 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Limch1Q3UH68 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
Limch1Q3UH68 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
Limch1Q3UH68 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Limch1Q3UH68 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Limch1Q3UH68 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Limch1Q3UH68 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Limch1Q3UH68 Gm44949-201ENSMUST00000206423 1450 ntBASIC24.3■■□□□ 1.48
Limch1Q3UH68 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
Limch1Q3UH68 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Limch1Q3UH68 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Limch1Q3UH68 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Limch1Q3UH68 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Limch1Q3UH68 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC24.29■■□□□ 1.48
Limch1Q3UH68 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Limch1Q3UH68 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
Limch1Q3UH68 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC24.29■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 102.8 ms