Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp6P0C0A3 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp6P0C0A3 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
Chmp6P0C0A3 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC22.52■■□□□ 1.2
Chmp6P0C0A3 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Chmp6P0C0A3 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp6P0C0A3 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp6P0C0A3 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Chmp6P0C0A3 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.19
Chmp6P0C0A3 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp6P0C0A3 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp6P0C0A3 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC22.49■■□□□ 1.19
Chmp6P0C0A3 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC22.49■■□□□ 1.19
Chmp6P0C0A3 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC22.49■■□□□ 1.19
Chmp6P0C0A3 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC22.49■■□□□ 1.19
Chmp6P0C0A3 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC22.49■■□□□ 1.19
Chmp6P0C0A3 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Chmp6P0C0A3 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC22.49■■□□□ 1.19
Chmp6P0C0A3 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp6P0C0A3 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp6P0C0A3 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp6P0C0A3 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp6P0C0A3 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Rps24-207ENSMUST00000224568 714 ntBASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Chmp6P0C0A3 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
Chmp6P0C0A3 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Chmp6P0C0A3 Etf1-202ENSMUST00000180351 108 ntBASIC22.45■■□□□ 1.18
Chmp6P0C0A3 Gm9959-201ENSMUST00000068277 390 ntBASIC22.45■■□□□ 1.18
Chmp6P0C0A3 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC22.45■■□□□ 1.18
Chmp6P0C0A3 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Chmp6P0C0A3 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Chmp6P0C0A3 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Chmp6P0C0A3 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC22.44■■□□□ 1.18
Chmp6P0C0A3 Notumos-201ENSMUST00000151998 2659 ntBASIC22.44■■□□□ 1.18
Chmp6P0C0A3 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Chmp6P0C0A3 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
Chmp6P0C0A3 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Chmp6P0C0A3 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Chmp6P0C0A3 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC22.43■■□□□ 1.18
Chmp6P0C0A3 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Chmp6P0C0A3 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC22.43■■□□□ 1.18
Chmp6P0C0A3 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Chmp6P0C0A3 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC22.43■■□□□ 1.18
Chmp6P0C0A3 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chmp6P0C0A3 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chmp6P0C0A3 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC22.42■■□□□ 1.18
Chmp6P0C0A3 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chmp6P0C0A3 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chmp6P0C0A3 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chmp6P0C0A3 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Gm14117-201ENSMUST00000122417 843 ntBASIC22.41■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms