Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trav13d-3J3QMG8 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
Trav13d-3J3QMG8 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav13d-3J3QMG8 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav13d-3J3QMG8 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav13d-3J3QMG8 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trav13d-3J3QMG8 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav13d-3J3QMG8 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav13d-3J3QMG8 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trav13d-3J3QMG8 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav13d-3J3QMG8 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trav13d-3J3QMG8 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Trav13d-3J3QMG8 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav13d-3J3QMG8 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav13d-3J3QMG8 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav13d-3J3QMG8 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav13d-3J3QMG8 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav13d-3J3QMG8 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav13d-3J3QMG8 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav13d-3J3QMG8 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.28■□□□□ 0.52
Trav13d-3J3QMG8 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav13d-3J3QMG8 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav13d-3J3QMG8 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Trav13d-3J3QMG8 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav13d-3J3QMG8 Gm5913-201ENSMUST00000119397 1399 ntBASIC18.27■□□□□ 0.51
Trav13d-3J3QMG8 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.26■□□□□ 0.51
Trav13d-3J3QMG8 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav13d-3J3QMG8 Gm10399-202ENSMUST00000202768 748 ntBASIC18.26■□□□□ 0.51
Trav13d-3J3QMG8 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.26■□□□□ 0.51
Trav13d-3J3QMG8 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav13d-3J3QMG8 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav13d-3J3QMG8 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
Trav13d-3J3QMG8 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav13d-3J3QMG8 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav13d-3J3QMG8 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Gm5812-201ENSMUST00000061073 957 ntBASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav13d-3J3QMG8 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.23■□□□□ 0.51
Trav13d-3J3QMG8 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Gm5522-201ENSMUST00000189483 1242 ntBASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav13d-3J3QMG8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 Gm15820-201ENSMUST00000201566 728 ntBASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav13d-3J3QMG8 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms