Protein–RNA interactions for Protein: B9EKX1

Ptchd4, Patched domain-containing protein 4, mousemouse

Predictions only

Length 904 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd4B9EKX1 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ptchd4B9EKX1 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ptchd4B9EKX1 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC22.51■■□□□ 1.19
Ptchd4B9EKX1 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ptchd4B9EKX1 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Ptchd4B9EKX1 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ptchd4B9EKX1 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ptchd4B9EKX1 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
Ptchd4B9EKX1 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Ptchd4B9EKX1 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ptchd4B9EKX1 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ptchd4B9EKX1 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ptchd4B9EKX1 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ptchd4B9EKX1 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ptchd4B9EKX1 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
Ptchd4B9EKX1 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC22.48■■□□□ 1.19
Ptchd4B9EKX1 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ptchd4B9EKX1 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Ptchd4B9EKX1 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC22.47■■□□□ 1.19
Ptchd4B9EKX1 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ptchd4B9EKX1 AC153962.1-201ENSMUST00000218530 1948 ntBASIC22.47■■□□□ 1.19
Ptchd4B9EKX1 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC22.47■■□□□ 1.19
Ptchd4B9EKX1 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ptchd4B9EKX1 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ptchd4B9EKX1 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Ptchd4B9EKX1 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC22.46■■□□□ 1.19
Ptchd4B9EKX1 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Ptchd4B9EKX1 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Ptchd4B9EKX1 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Ptchd4B9EKX1 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Ptchd4B9EKX1 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Ptchd4B9EKX1 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ptchd4B9EKX1 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
Ptchd4B9EKX1 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC22.45■■□□□ 1.19
Ptchd4B9EKX1 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ptchd4B9EKX1 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC22.44■■□□□ 1.18
Ptchd4B9EKX1 Gm43137-201ENSMUST00000198052 594 ntBASIC22.44■■□□□ 1.18
Ptchd4B9EKX1 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Ptchd4B9EKX1 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Ptchd4B9EKX1 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC22.43■■□□□ 1.18
Ptchd4B9EKX1 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
Ptchd4B9EKX1 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
Ptchd4B9EKX1 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC22.43■■□□□ 1.18
Ptchd4B9EKX1 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Ptchd4B9EKX1 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ptchd4B9EKX1 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ptchd4B9EKX1 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
Ptchd4B9EKX1 Gm8770-201ENSMUST00000121113 1109 ntBASIC22.42■■□□□ 1.18
Ptchd4B9EKX1 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
Ptchd4B9EKX1 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ptchd4B9EKX1 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ptchd4B9EKX1 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC22.42■■□□□ 1.18
Ptchd4B9EKX1 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ptchd4B9EKX1 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ptchd4B9EKX1 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ptchd4B9EKX1 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ptchd4B9EKX1 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ptchd4B9EKX1 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ptchd4B9EKX1 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Gm6139-201ENSMUST00000079261 882 ntBASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
Ptchd4B9EKX1 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ptchd4B9EKX1 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Ptchd4B9EKX1 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Ptchd4B9EKX1 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ptchd4B9EKX1 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ptchd4B9EKX1 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ptchd4B9EKX1 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ptchd4B9EKX1 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ptchd4B9EKX1 Gm42418-201ENSMUST00000182010 1831 ntBASIC22.38■■□□□ 1.17
Ptchd4B9EKX1 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ptchd4B9EKX1 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Ptchd4B9EKX1 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ptchd4B9EKX1 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC22.38■■□□□ 1.17
Ptchd4B9EKX1 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ptchd4B9EKX1 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms