Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Gm12606-202ENSMUST00000129527 1184 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Gm20495-201ENSMUST00000173902 235 ntBASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 AC154589.2-201ENSMUST00000228847 251 ntBASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Ngp-201ENSMUST00000035061 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Gm5507-201ENSMUST00000091897 1008 ntBASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Mir598-201ENSMUST00000102094 79 ntBASIC16.22■□□□□ 0.19
Scn4aQ9ER60 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Gm29593-201ENSMUST00000189827 620 ntTSL 5 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Gm8643-201ENSMUST00000195228 625 ntBASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Gm6370-202ENSMUST00000198912 1017 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Prmt1-214ENSMUST00000209124 741 ntTSL 5 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Gm32786-201ENSMUST00000211351 628 ntTSL 3 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 CT030166.5-201ENSMUST00000222249 420 ntBASIC16.22■□□□□ 0.19
Scn4aQ9ER60 CT030170.2-201ENSMUST00000223267 126 ntBASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Fibp-205ENSMUST00000225141 1209 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 1700064H15Rik-201ENSMUST00000119133 394 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Mt1-203ENSMUST00000212291 633 ntTSL 2 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Ptma-201ENSMUST00000045897 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Speer4f1-201ENSMUST00000076099 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Teddm3-201ENSMUST00000170665 1346 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Scn4aQ9ER60 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC16.22■□□□□ 0.19
Scn4aQ9ER60 Gas7-202ENSMUST00000108680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Gm7701-201ENSMUST00000163185 1479 ntBASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Gm27196-201ENSMUST00000184787 2582 ntBASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Snord23-201ENSMUST00000116828 109 ntBASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Gm12961-201ENSMUST00000120507 1050 ntBASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Gm15373-201ENSMUST00000121495 214 ntBASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Tnni1-204ENSMUST00000139986 651 ntTSL 5 BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Gm23582-201ENSMUST00000158530 139 ntBASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Gm29689-201ENSMUST00000221076 589 ntBASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Scn4aQ9ER60 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Scn4aQ9ER60 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Scn4aQ9ER60 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Scn4aQ9ER60 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Scn4aQ9ER60 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm6758-201ENSMUST00000119643 1055 ntBASIC16.2■□□□□ 0.18
Scn4aQ9ER60 4930533B01Rik-201ENSMUST00000123377 1029 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm4858-201ENSMUST00000179064 735 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm6794-201ENSMUST00000203829 457 ntBASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms