Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Gm11978-201ENSMUST00000122315 466 ntBASIC13.73□□□□□ -0.21
Smc1aQ9CU62 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Gm26956-201ENSMUST00000182176 986 ntBASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Gm44124-201ENSMUST00000204159 472 ntBASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Gm30285-201ENSMUST00000214614 422 ntBASIC13.73□□□□□ -0.21
Smc1aQ9CU62 AC155637.1-201ENSMUST00000218560 636 ntBASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Gm8798-201ENSMUST00000211877 1661 ntBASIC13.72□□□□□ -0.21
Smc1aQ9CU62 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 AC101945.2-201ENSMUST00000227886 1377 ntBASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Gm12502-201ENSMUST00000120197 444 ntBASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Gm13316-201ENSMUST00000140537 691 ntBASIC13.72□□□□□ -0.21
Smc1aQ9CU62 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Smc1aQ9CU62 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm24830-201ENSMUST00000102024 166 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm12715-201ENSMUST00000121430 1128 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm25890-201ENSMUST00000177643 165 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Rnu1b2-201ENSMUST00000178073 165 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Rnu1b1-201ENSMUST00000178250 165 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm22614-201ENSMUST00000178300 165 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Rps4l-202ENSMUST00000204242 789 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm22042-201ENSMUST00000082989 165 ntBASIC13.71□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms