Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Gm6023-201ENSMUST00000118217 606 ntBASIC12.91□□□□□ -0.34
Usp11Q99K46 Gm13492-201ENSMUST00000119772 665 ntBASIC12.91□□□□□ -0.34
Usp11Q99K46 Gm16296-201ENSMUST00000159905 325 ntBASIC12.91□□□□□ -0.34
Usp11Q99K46 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Gm8399-201ENSMUST00000082300 1117 ntBASIC12.91□□□□□ -0.34
Usp11Q99K46 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.91□□□□□ -0.34
Usp11Q99K46 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Usp11Q99K46 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Usp11Q99K46 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Usp11Q99K46 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Usp11Q99K46 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.9□□□□□ -0.34
Usp11Q99K46 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Usp11Q99K46 Mir1247-201ENSMUST00000116706 82 ntBASIC12.9□□□□□ -0.34
Usp11Q99K46 Gm11793-201ENSMUST00000120433 981 ntBASIC12.9□□□□□ -0.34
Usp11Q99K46 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC12.9□□□□□ -0.34
Usp11Q99K46 Mir1938-201ENSMUST00000158746 100 ntBASIC12.9□□□□□ -0.34
Usp11Q99K46 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC12.9□□□□□ -0.34
Usp11Q99K46 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC12.9□□□□□ -0.34
Usp11Q99K46 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Usp11Q99K46 AC132317.1-201ENSMUST00000227227 962 ntBASIC12.9□□□□□ -0.34
Usp11Q99K46 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Usp11Q99K46 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Usp11Q99K46 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.9□□□□□ -0.34
Usp11Q99K46 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Usp11Q99K46 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Usp11Q99K46 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.9□□□□□ -0.34
Usp11Q99K46 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Usp11Q99K46 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Usp11Q99K46 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Usp11Q99K46 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.9□□□□□ -0.35
Usp11Q99K46 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC12.89□□□□□ -0.35
Usp11Q99K46 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Usp11Q99K46 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Usp11Q99K46 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC12.89□□□□□ -0.35
Usp11Q99K46 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Usp11Q99K46 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Usp11Q99K46 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Usp11Q99K46 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Usp11Q99K46 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms