Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm4959-201ENSMUST00000197271 1044 ntBASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm29705-201ENSMUST00000212598 474 ntBASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm44086-201ENSMUST00000203251 2349 ntBASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Mir8109-201ENSMUST00000184375 117 ntBASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Gm8099-201ENSMUST00000200510 742 ntBASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Gm19309-201ENSMUST00000218295 205 ntBASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col28a1Q2UY11 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC11.9□□□□□ -0.51
Col28a1Q2UY11 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Col28a1Q2UY11 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Col28a1Q2UY11 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.9□□□□□ -0.51
Col28a1Q2UY11 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Col28a1Q2UY11 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm24231-201ENSMUST00000104315 133 ntBASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm38241-201ENSMUST00000192641 898 ntBASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm43822-201ENSMUST00000200285 476 ntBASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
Col28a1Q2UY11 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms