Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
Cdx1P18111 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm12957-201ENSMUST00000117835 377 ntBASIC9.93□□□□□ -0.82
Cdx1P18111 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm26464-201ENSMUST00000157094 305 ntBASIC9.93□□□□□ -0.82
Cdx1P18111 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC9.93□□□□□ -0.82
Cdx1P18111 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm27847-201ENSMUST00000183711 107 ntBASIC9.93□□□□□ -0.82
Cdx1P18111 Gm27375-201ENSMUST00000183799 107 ntBASIC9.93□□□□□ -0.82
Cdx1P18111 Gm29741-201ENSMUST00000192667 421 ntBASIC9.93□□□□□ -0.82
Cdx1P18111 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
Cdx1P18111 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
Cdx1P18111 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Gm26846-201ENSMUST00000181865 4869 ntTSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC9.92□□□□□ -0.82
Cdx1P18111 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC9.92□□□□□ -0.82
Cdx1P18111 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.82
Cdx1P18111 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
Cdx1P18111 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC9.92□□□□□ -0.82
Cdx1P18111 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC9.92□□□□□ -0.82
Cdx1P18111 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC9.92□□□□□ -0.82
Cdx1P18111 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
Cdx1P18111 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC9.92□□□□□ -0.82
Cdx1P18111 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC9.92□□□□□ -0.82
Cdx1P18111 Gm6983-201ENSMUST00000214912 628 ntBASIC9.92□□□□□ -0.82
Cdx1P18111 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
Cdx1P18111 Gm37333-201ENSMUST00000192904 2251 ntBASIC9.92□□□□□ -0.82
Cdx1P18111 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Arhgap24-202ENSMUST00000073302 3151 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC9.92□□□□□ -0.82
Cdx1P18111 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Gm37015-201ENSMUST00000192763 1521 ntBASIC9.92□□□□□ -0.82
Cdx1P18111 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Cdx1P18111 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Cdx1P18111 Gm43375-201ENSMUST00000196705 2480 ntBASIC9.91□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms