Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Col3a1P08121 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Col3a1P08121 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC14.44□□□□□ -0.1
Col3a1P08121 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm4726-201ENSMUST00000135604 736 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 Gm6019-201ENSMUST00000148369 736 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC14.44□□□□□ -0.1
Col3a1P08121 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm6450-201ENSMUST00000200896 574 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
Col3a1P08121 AC166344.1-201ENSMUST00000223745 674 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 AC171241.1-201ENSMUST00000228144 1166 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Col3a1P08121 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Col3a1P08121 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Col3a1P08121 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Col3a1P08121 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Col3a1P08121 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Col3a1P08121 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Col3a1P08121 Gm11246-201ENSMUST00000120880 345 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm8737-201ENSMUST00000122208 642 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Gm6407-201ENSMUST00000176468 549 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm27390-201ENSMUST00000184516 176 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm28937-201ENSMUST00000185413 695 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm29400-201ENSMUST00000187208 695 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm28662-201ENSMUST00000188446 695 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm28251-201ENSMUST00000188835 695 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm9136-201ENSMUST00000193368 454 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm37318-201ENSMUST00000194325 695 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm38017-201ENSMUST00000194768 695 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm37287-201ENSMUST00000195449 695 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Gm37793-201ENSMUST00000195548 695 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC14.43□□□□□ -0.1
Col3a1P08121 Gm18974-201ENSMUST00000221478 1031 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 AC132901.1-201ENSMUST00000224345 508 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Col3a1P08121 Snora73b-201ENSMUST00000083419 205 ntBASIC14.43□□□□□ -0.1
Col3a1P08121 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Col3a1P08121 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Col3a1P08121 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col3a1P08121 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC14.42□□□□□ -0.1
Col3a1P08121 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC14.42□□□□□ -0.1
Col3a1P08121 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Gm18198-201ENSMUST00000204986 1551 ntBASIC14.42□□□□□ -0.1
Col3a1P08121 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Col3a1P08121 Gm14441-201ENSMUST00000121960 540 ntBASIC14.42□□□□□ -0.1
Col3a1P08121 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Col3a1P08121 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Col3a1P08121 Gm43186-201ENSMUST00000198130 824 ntBASIC14.42□□□□□ -0.1
Col3a1P08121 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col3a1P08121 Gm9132-201ENSMUST00000210182 832 ntBASIC14.42□□□□□ -0.1
Col3a1P08121 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC14.42□□□□□ -0.1
Col3a1P08121 CT485607.1-201ENSMUST00000216100 85 ntBASIC14.42□□□□□ -0.1
Col3a1P08121 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC14.42□□□□□ -0.1
Col3a1P08121 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 84.6 ms