Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Osgep-207ENSMUST00000162177 1219 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Gm43117-201ENSMUST00000198531 379 ntBASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Cyp2a21-ps-201ENSMUST00000206638 1471 ntBASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Gm13608-201ENSMUST00000121807 1406 ntBASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Pfn1-202ENSMUST00000108549 608 ntTSL 2 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Mapk8-202ENSMUST00000111942 927 ntTSL 5 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Gm15287-201ENSMUST00000132564 751 ntTSL 2 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 A830092H15Rik-202ENSMUST00000195446 649 ntTSL 3 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Gm3137-201ENSMUST00000218177 620 ntTSL 3 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Gm8155-201ENSMUST00000216363 1612 ntBASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Gm43056-201ENSMUST00000197865 2791 ntBASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn4aQ9ER60 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gm38192-201ENSMUST00000194364 1847 ntBASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Olfr1263-201ENSMUST00000111507 1029 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gm15831-201ENSMUST00000156195 516 ntTSL 2 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gm13290-201ENSMUST00000177806 968 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gm9644-201ENSMUST00000212828 1183 ntBASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Thy1-205ENSMUST00000215156 460 ntTSL 5 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gm6741-201ENSMUST00000057074 1330 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 AC126262.1-201ENSMUST00000221802 1904 ntBASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 H2-M10.1-201ENSMUST00000025322 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gm13799-201ENSMUST00000138883 838 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gm11365-201ENSMUST00000144277 774 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Mir7088-201ENSMUST00000184227 86 ntBASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Fthl17a-201ENSMUST00000048382 835 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Hsf2-204ENSMUST00000220042 2430 ntTSL 5 BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Gstm3-201ENSMUST00000004136 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Scn4aQ9ER60 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Scn4aQ9ER60 Gm6024-201ENSMUST00000117850 1558 ntBASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms