Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdc40Q9DC48 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm4366-201ENSMUST00000201488 1342 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm24830-201ENSMUST00000102024 166 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm13875-201ENSMUST00000120162 282 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Rmrp-201ENSMUST00000157463 271 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm25890-201ENSMUST00000177643 165 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm22614-201ENSMUST00000178300 165 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm22042-201ENSMUST00000082989 165 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm26232-201ENSMUST00000083360 166 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm24136-201ENSMUST00000083374 165 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm26110-201ENSMUST00000083971 165 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC11.41□□□□□ -0.58
Cdc40Q9DC48 AC123857.2-201ENSMUST00000225756 1582 ntBASIC11.41□□□□□ -0.58
Cdc40Q9DC48 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Gm25214-201ENSMUST00000104573 129 ntBASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Gm14760-201ENSMUST00000121831 999 ntBASIC11.4□□□□□ -0.58
Cdc40Q9DC48 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms