Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm14921-201ENSMUST00000118643 908 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm13369-201ENSMUST00000119442 987 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm13829-201ENSMUST00000119600 138 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm24644-201ENSMUST00000157114 139 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm22331-201ENSMUST00000158066 136 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm22121-201ENSMUST00000175148 54 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm27331-201ENSMUST00000183705 60 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm27847-201ENSMUST00000183711 107 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm27375-201ENSMUST00000183799 107 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm37042-201ENSMUST00000193816 581 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm6266-201ENSMUST00000203844 806 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm44772-201ENSMUST00000207623 1191 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Gm6210-201ENSMUST00000204734 1942 ntBASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Ddx28Q9CWT6 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gm14704-201ENSMUST00000120300 874 ntBASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gm4271-201ENSMUST00000174444 973 ntBASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gm7561-201ENSMUST00000211203 886 ntBASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gm29705-201ENSMUST00000212598 474 ntBASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Ddx28Q9CWT6 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
Ddx28Q9CWT6 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Gm42442-201ENSMUST00000197951 1133 ntBASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Gm18916-201ENSMUST00000198264 1246 ntBASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Gm8099-201ENSMUST00000200510 742 ntBASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 105.9 ms