Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm45909-201ENSMUST00000212413 1031 ntBASIC16.75■□□□□ 0.27
Usp40Q8BWR4 AC141438.2-201ENSMUST00000215068 271 ntBASIC16.75■□□□□ 0.27
Usp40Q8BWR4 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 AC135114.1-201ENSMUST00000228682 270 ntBASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Gm9826-201ENSMUST00000029124 1299 ntBASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Gm38385-201ENSMUST00000194454 2351 ntBASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm37437-201ENSMUST00000194451 1937 ntBASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm15595-201ENSMUST00000120840 961 ntBASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm4797-201ENSMUST00000219075 1283 ntBASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gm5780-201ENSMUST00000217774 1834 ntBASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC16.74■□□□□ 0.27
Usp40Q8BWR4 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gm17391-201ENSMUST00000171036 126 ntBASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Mir7032-201ENSMUST00000185154 79 ntBASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gm7395-201ENSMUST00000216059 1045 ntBASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gm43447-201ENSMUST00000198471 1535 ntBASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Gm44999-201ENSMUST00000207456 1493 ntBASIC16.73■□□□□ 0.27
Usp40Q8BWR4 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Usp40Q8BWR4 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms