Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm5455-201ENSMUST00000058710 715 ntBASIC14.44□□□□□ -0.1
Trim56Q80VI1 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Mir433-201ENSMUST00000093564 124 ntBASIC14.44□□□□□ -0.1
Trim56Q80VI1 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm43447-201ENSMUST00000198471 1535 ntBASIC14.43□□□□□ -0.1
Trim56Q80VI1 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm24990-201ENSMUST00000157406 323 ntBASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gm7993-201ENSMUST00000200970 1384 ntBASIC14.43□□□□□ -0.1
Trim56Q80VI1 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim56Q80VI1 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Map1b-203ENSMUST00000223725 2669 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Gm6189-201ENSMUST00000164487 2082 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Gm43962-201ENSMUST00000203898 190 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 Gm44711-201ENSMUST00000205414 1264 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC14.42□□□□□ -0.1
Trim56Q80VI1 CT485787.1-201ENSMUST00000225617 968 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Gm29100-201ENSMUST00000187564 4410 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.42□□□□□ -0.1
Trim56Q80VI1 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim56Q80VI1 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Gm11439-201ENSMUST00000118598 409 ntBASIC14.41□□□□□ -0.1
Trim56Q80VI1 Gm12380-201ENSMUST00000119012 544 ntBASIC14.41□□□□□ -0.1
Trim56Q80VI1 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Gm4607-201ENSMUST00000206649 577 ntBASIC14.41□□□□□ -0.1
Trim56Q80VI1 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Gm8385-201ENSMUST00000058999 643 ntBASIC14.41□□□□□ -0.1
Trim56Q80VI1 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms