Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm15711-201ENSMUST00000118889 535 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm25732-201ENSMUST00000175168 60 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Ighv4-2-201ENSMUST00000192975 362 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm18038-201ENSMUST00000197900 485 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm17827-201ENSMUST00000211825 742 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Abhd11os-203ENSMUST00000222613 363 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Nsd1-205ENSMUST00000224693 852 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm5455-201ENSMUST00000058710 715 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm7114-201ENSMUST00000190159 1789 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 Gm45266-201ENSMUST00000210111 2173 ntBASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Ubfd1Q78JW9 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm44241-201ENSMUST00000203230 1662 ntBASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm27552-201ENSMUST00000183351 62 ntBASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm27844-201ENSMUST00000183613 62 ntBASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm44711-201ENSMUST00000205414 1264 ntBASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Rubie-203ENSMUST00000227803 2430 ntBASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Gm44942-201ENSMUST00000096093 2072 ntBASIC11.95□□□□□ -0.5
Ubfd1Q78JW9 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Ubfd1Q78JW9 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms