Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm26232-201ENSMUST00000083360 166 ntBASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Rnu1b6-201ENSMUST00000083839 166 ntBASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm27177-202ENSMUST00000183514 2703 ntBASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Gm6015-201ENSMUST00000217493 1586 ntBASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Gm20482-202ENSMUST00000174729 825 ntBASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Gm7172-201ENSMUST00000218047 1152 ntBASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Gm9996-201ENSMUST00000070359 913 ntBASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Gm9361-201ENSMUST00000198695 1507 ntBASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Gm8862-201ENSMUST00000198379 1346 ntBASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC13.12□□□□□ -0.31
Upf3bQ3ULL6 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm22323-201ENSMUST00000103832 109 ntBASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm13350-201ENSMUST00000120519 479 ntBASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm7584-201ENSMUST00000175829 940 ntBASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm27046-201ENSMUST00000182160 463 ntBASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm7619-201ENSMUST00000210649 1282 ntBASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC13.11□□□□□ -0.31
Upf3bQ3ULL6 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm9279-201ENSMUST00000223175 1606 ntBASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms