Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Gm14723-201ENSMUST00000118686 215 ntBASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Gm14704-201ENSMUST00000120300 874 ntBASIC11.93□□□□□ -0.5
Col28a1Q2UY11 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC11.93□□□□□ -0.5
Col28a1Q2UY11 AC155237.1-201ENSMUST00000226196 1279 ntBASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Gm8038-201ENSMUST00000164674 2044 ntBASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm12846-201ENSMUST00000120431 1373 ntBASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 AC160405.1-201ENSMUST00000218207 1545 ntBASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm43984-201ENSMUST00000204572 2864 ntBASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Proscos-202ENSMUST00000178990 666 ntBASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm27331-201ENSMUST00000183705 60 ntBASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm17383-201ENSMUST00000078739 1041 ntBASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col28a1Q2UY11 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm6152-201ENSMUST00000151704 340 ntBASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm23363-201ENSMUST00000175024 79 ntBASIC11.91□□□□□ -0.5
Col28a1Q2UY11 Gm27243-201ENSMUST00000183964 521 ntBASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms