Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm21998-201ENSMUST00000117552 1308 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
Col8a1Q00780 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC10.5□□□□□ -0.73
Col8a1Q00780 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
Col8a1Q00780 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm13315-201ENSMUST00000120376 991 ntBASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm12899-201ENSMUST00000120565 551 ntBASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm12196-201ENSMUST00000120954 262 ntBASIC10.49□□□□□ -0.73
Col8a1Q00780 Mir1901-201ENSMUST00000122616 78 ntBASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm16296-201ENSMUST00000159905 325 ntBASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Mirlet7i-201ENSMUST00000083472 85 ntBASIC10.49□□□□□ -0.73
Col8a1Q00780 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Gm9387-201ENSMUST00000098624 1320 ntBASIC10.49□□□□□ -0.73
Col8a1Q00780 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Col8a1Q00780 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC10.49□□□□□ -0.73
Col8a1Q00780 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm10305-201ENSMUST00000195331 2475 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm4726-201ENSMUST00000135604 736 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm6019-201ENSMUST00000148369 736 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm6397-201ENSMUST00000161973 1069 ntBASIC10.48□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms