Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.2□□□□□ -0.62
Cdh11P55288 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.19□□□□□ -0.62
Cdh11P55288 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Cdh11P55288 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Cdh11P55288 Gm11637-201ENSMUST00000120601 592 ntBASIC11.19□□□□□ -0.62
Cdh11P55288 Gm12291-201ENSMUST00000121627 311 ntBASIC11.19□□□□□ -0.62
Cdh11P55288 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdh11P55288 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdh11P55288 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.19□□□□□ -0.62
Cdh11P55288 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.19□□□□□ -0.62
Cdh11P55288 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdh11P55288 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC11.19□□□□□ -0.62
Cdh11P55288 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC11.19□□□□□ -0.62
Cdh11P55288 Gm35960-201ENSMUST00000202712 767 ntBASIC11.19□□□□□ -0.62
Cdh11P55288 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC11.19□□□□□ -0.62
Cdh11P55288 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.19□□□□□ -0.62
Cdh11P55288 AC154171.1-201ENSMUST00000224610 643 ntBASIC11.19□□□□□ -0.62
Cdh11P55288 AC154462.2-201ENSMUST00000227519 370 ntBASIC11.19□□□□□ -0.62
Cdh11P55288 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdh11P55288 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Cdh11P55288 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
Cdh11P55288 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Cdh11P55288 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdh11P55288 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdh11P55288 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Cdh11P55288 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
Cdh11P55288 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Cdh11P55288 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC11.18□□□□□ -0.62
Cdh11P55288 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 AC160410.1-201ENSMUST00000219298 1972 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Cdh11P55288 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdh11P55288 Gm6023-201ENSMUST00000118217 606 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC11.18□□□□□ -0.62
Cdh11P55288 Gm5896-201ENSMUST00000189662 1024 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Ighv1-60-201ENSMUST00000195816 405 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Gm43118-201ENSMUST00000199149 775 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC11.18□□□□□ -0.62
Cdh11P55288 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdh11P55288 Gm7172-201ENSMUST00000218047 1152 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Gm19309-201ENSMUST00000218295 205 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdh11P55288 Gm19163-201ENSMUST00000223313 780 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Cdh11P55288 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Cdh11P55288 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdh11P55288 Gm17383-201ENSMUST00000078739 1041 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Snora73a-201ENSMUST00000082453 205 ntBASIC11.18□□□□□ -0.62
Cdh11P55288 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 73.8 ms