Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cux1P53564 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Cux1P53564 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cux1P53564 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC18.55■□□□□ 0.56
Cux1P53564 Kcnk16-202ENSMUST00000225596 2127 ntBASIC18.55■□□□□ 0.56
Cux1P53564 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cux1P53564 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cux1P53564 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cux1P53564 Gm21358-201ENSMUST00000191645 1659 ntBASIC18.54■□□□□ 0.56
Cux1P53564 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Cux1P53564 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Cux1P53564 Gm3017-201ENSMUST00000203603 1126 ntBASIC18.54■□□□□ 0.56
Cux1P53564 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC18.54■□□□□ 0.56
Cux1P53564 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Gm45546-201ENSMUST00000211053 2394 ntBASIC18.54■□□□□ 0.56
Cux1P53564 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Cux1P53564 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Cux1P53564 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Cux1P53564 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Cux1P53564 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Cux1P53564 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
Cux1P53564 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
Cux1P53564 AC154184.3-201ENSMUST00000225620 1090 ntBASIC18.54■□□□□ 0.56
Cux1P53564 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Cux1P53564 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cux1P53564 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC18.53■□□□□ 0.56
Cux1P53564 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC18.53■□□□□ 0.56
Cux1P53564 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Cux1P53564 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Gm11244-201ENSMUST00000121243 237 ntBASIC18.53■□□□□ 0.56
Cux1P53564 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC18.53■□□□□ 0.56
Cux1P53564 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Cux1P53564 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC18.53■□□□□ 0.56
Cux1P53564 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cux1P53564 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Cux1P53564 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC18.52■□□□□ 0.56
Cux1P53564 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Cux1P53564 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 Zfp125-201ENSMUST00000079237 2488 ntBASIC18.52■□□□□ 0.56
Cux1P53564 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC18.52■□□□□ 0.56
Cux1P53564 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Cux1P53564 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Cux1P53564 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
Cux1P53564 Gm11422-201ENSMUST00000118925 1103 ntBASIC18.52■□□□□ 0.56
Cux1P53564 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC18.52■□□□□ 0.56
Cux1P53564 AC154176.1-201ENSMUST00000225897 220 ntBASIC18.52■□□□□ 0.56
Cux1P53564 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Cux1P53564 Gm4900-201ENSMUST00000222046 1628 ntBASIC18.52■□□□□ 0.56
Cux1P53564 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cux1P53564 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cux1P53564 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cux1P53564 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cux1P53564 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Cux1P53564 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Cux1P53564 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cux1P53564 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cux1P53564 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Cux1P53564 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Cux1P53564 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Cux1P53564 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms