Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
Cdx1P18111 Gm3222-201ENSMUST00000071282 990 ntBASIC9.95□□□□□ -0.82
Cdx1P18111 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
Cdx1P18111 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC9.95□□□□□ -0.82
Cdx1P18111 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC9.95□□□□□ -0.82
Cdx1P18111 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
Cdx1P18111 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC9.95□□□□□ -0.82
Cdx1P18111 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.82
Cdx1P18111 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Cdx1P18111 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
Cdx1P18111 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Cdx1P18111 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Gm42840-201ENSMUST00000200303 2251 ntBASIC9.94□□□□□ -0.82
Cdx1P18111 Gm45828-201ENSMUST00000206938 1836 ntBASIC9.94□□□□□ -0.82
Cdx1P18111 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC9.94□□□□□ -0.82
Cdx1P18111 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC9.94□□□□□ -0.82
Cdx1P18111 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Gm13226-201ENSMUST00000117838 404 ntBASIC9.94□□□□□ -0.82
Cdx1P18111 Gm12416-201ENSMUST00000120911 1008 ntBASIC9.94□□□□□ -0.82
Cdx1P18111 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
Cdx1P18111 Snora78-201ENSMUST00000158630 128 ntBASIC9.94□□□□□ -0.82
Cdx1P18111 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Cdx1P18111 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC9.94□□□□□ -0.82
Cdx1P18111 Gm45784-201ENSMUST00000188360 142 ntBASIC9.94□□□□□ -0.82
Cdx1P18111 Gm19184-201ENSMUST00000196798 928 ntBASIC9.94□□□□□ -0.82
Cdx1P18111 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Cdx1P18111 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC9.94□□□□□ -0.82
Cdx1P18111 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Cdx1P18111 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Usp44-202ENSMUST00000216224 2449 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Cdx1P18111 Hoxa1-201ENSMUST00000000964 2251 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
Cdx1P18111 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Cdx1P18111 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC9.93□□□□□ -0.82
Cdx1P18111 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC9.93□□□□□ -0.82
Cdx1P18111 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC9.93□□□□□ -0.82
Cdx1P18111 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Cdx1P18111 AC131068.2-201ENSMUST00000226175 1453 ntBASIC9.93□□□□□ -0.82
Cdx1P18111 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms